STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ESL02447.1Sigma-70 region 2; KEGG: shn:Shewana3_0763 0.0035 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)    
Predicted Functional Partners:
ESL02448.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.793
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.635
ESL04434.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.538
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.526
ESL02684.1
Hypothetical protein.
  
     0.521
ESL03476.1
Hypothetical protein.
  
    0.432
ESL04182.1
KEGG: cne:CNA02690 0.00089 hypothetical protein K02155; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.429
ESL02445.1
Hypothetical protein.
       0.417
ESL02446.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.417
Your Current Organism:
Catonella morbi
NCBI taxonomy Id: 592026
Other names: C. morbi ATCC 51271, Catonella morbi ATCC 51271, Catonella morbi str. ATCC 51271, Catonella morbi strain ATCC 51271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.