STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csm5CRISPR-associated RAMP protein, Csm5 family; Psort location: Cytoplasmic, score: 8.96. (388 aa)    
Predicted Functional Partners:
csm4
CRISPR-associated RAMP protein, Csm4 family; Psort location: Cytoplasmic, score: 8.96.
 
 0.998
csm3
CRISPR-associated RAMP protein, Csm3 family; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.998
csm2
CRISPR-associated protein, Csm2 family.
 
 
 0.998
csm1
CRISPR-associated protein, Csm1 family.
 
 
 0.997
EEW96597.1
Putative CRISPR-associated endoribonuclease Cas6.
 
   
 0.956
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.948
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.933
EEW96596.1
Putative CRISPR-associated protein, Csm6 family; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.910
EEW97997.1
Hypothetical protein; KEGG: ava:Ava_2519 3.0e-11 serine/threonine protein kinase K00908.
  
     0.493
EEW96603.1
Hypothetical protein.
       0.434
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus DSM 15470, Dialister invisus DSM 15470, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.