Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DDD_0200Putative iron-sulfur protein. (473 aa)    
Predicted Functional Partners:
ccoN
Putative cytochrome oxidase subunit (Cbb3-type); Belongs to the heme-copper respiratory oxidase family.
 
  
 0.985
ccoP
Cytochrome c oxidase (Chain III).
 
  
 0.959
ccoS
Cbb3-type cytochrome oxidase maturation protein.
 
  
 0.927
DDD_0202
FixH-like protein.
 
  
 0.925
DDD_0203
Integral membrane protein.
 
     0.915
DDD_0197
Hypothetical protein.
 
  
 0.909
DDD_0193
Putative cation-transporting P-type ATPase.
 
  
 0.900
hemN
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.810
DDD_0199
Hypothetical protein.
  
  
 0.768
DDD_0201
Hypothetical protein.
       0.556
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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