STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDD_1628OmpH family outer membrane protein. (174 aa)    
Predicted Functional Partners:
DDD_1626
Bacterial surface antigen D15 family outer membrane protein.
 
  
 0.798
DDD_1624
Inorganic polyphosphate/ATP-NAD kinase.
 
 
   0.703
DDD_1613
Hypothetical protein.
 
     0.666
DDD_1627
Putative outer membrane protein.
 
    
0.635
DDD_1847
Putative surface membrane protein, Bac_surface_Ag family.
 
  
 0.620
DDD_1142
Hypothetical protein.
  
     0.598
DDD_2444
Protein containing tetratricopeptide repeats.
  
  
 0.594
batC
Putative BatC, TPR_1 domain protein.
  
     0.590
DDD_2926
Hypothetical protein.
  
     0.560
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.547
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.