Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDD_1978Putative transmembrane protein. (256 aa)    
Predicted Functional Partners:
DDD_1977
O-methyltransferase.
       0.618
DDD_0316
Hypothetical protein.
  
     0.598
mrdB
Rod shape-determining membrane protein RodA; Belongs to the SEDS family.
       0.593
mrdA
Cell division protein FtsI/penicillin-binding protein.
       0.593
DDD_1981
Putative transmembrane protein.
       0.593
DDD_3465
Membrane protein-like protein.
  
     0.581
DDD_0462
Hypothetical protein.
  
     0.525
DDD_1860
LigB lipoprotein.
  
     0.517
DDD_2118
TPR repeat protein.
  
     0.511
DDD_3071
Putative membrane-anchored cell surface protein.
  
     0.503
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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