Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DDD_1981Putative transmembrane protein. (141 aa)    
Predicted Functional Partners:
mrdB
Rod shape-determining membrane protein RodA; Belongs to the SEDS family.
  
    0.823
mrdA
Cell division protein FtsI/penicillin-binding protein.
       0.819
mreC
Rod shape-determining protein.
  
    0.670
gldO
Gliding motility protein.
  
     0.648
gldB
Gliding motility protein.
  
     0.606
DDD_2449
DUF721 domain containing protein.
  
     0.606
DDD_2450
DUF490 domain containing protein.
  
     0.596
DDD_1978
Putative transmembrane protein.
       0.593
DDD_1997
DUF1239 domain containing protein.
  
     0.558
gldM
Gliding motility protein.
  
     0.553
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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