Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDD_2004Hypothetical protein. (325 aa)    
Predicted Functional Partners:
DDD_2003
Hypothetical protein.
       0.773
DDD_2001
Integrase; Belongs to the 'phage' integrase family.
       0.517
DDD_2002
Hypothetical protein.
       0.517
DDD_1670
Putative amidophosphoribosyl-transferase.
   
    0.516
apt
Adenine phosphoribosyltransferase (APRT); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.500
DDD_2724
phytanoyl-CoA dioxygenase.
  
     0.479
DDD_0721
Peptidase M15A.
  
     0.462
DDD_1281
phenylalanyl-tRNA synthetase alpha subunit.
  
     0.459
dam
Adenine-specific DNA methyltransferase.
  
    0.428
DDD_1316
Secreted polysaccharide polymerase.
  
     0.424
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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