Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDD_2005Hypothetical protein. (337 aa)    
Predicted Functional Partners:
DDD_2006
Hypothetical protein.
       0.773
ppiC
Peptidyl-prolyl cis-trans isomerase.
  
 0.708
DDD_3278
Peptidyl-prolyl cis-trans isomerase.
  
 0.708
dam
Adenine-specific DNA methyltransferase.
       0.555
htpG
Chaperone/heat shock protein; Molecular chaperone. Has ATPase activity.
   
 0.467
dnaK
Chaperone protein dnaK (Heat shock protein HSP70); Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.447
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.446
DDD_3127
FAD dependent oxidoreductase.
    
  0.406
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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