Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gldJGliding motility lipoprotein GldJ. (561 aa)    
Predicted Functional Partners:
gldO
Gliding motility protein.
 
 
 
 0.887
gldD
Gliding motility protein.
  
   
 0.842
gldB
Gliding motility protein.
  
   
 0.827
gldL
Gliding motility protein.
 
   
 0.809
sprA
SprA.
 
   
 0.775
gldH
Gliding motility protein.
  
   
 0.767
DDD_2013
Hypothetical protein.
 
   
 0.755
gldG
Gliding motility protein.
  
   
 0.752
DDD_1865
Hypothetical protein.
  
     0.748
DDD_1352
TPR domain protein.
  
   
 0.707
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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