STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDD_2850Dps family ferritin-like DNA-binding protein; Belongs to the Dps family. (163 aa)    
Predicted Functional Partners:
DDD_2851
Hypothetical protein.
       0.773
DDD_0047
Ribosomal protein L11 methyltransferase; Belongs to the ClpS family.
   
 
 0.728
DDD_2806
Thioredoxin peroxidase.
  
  
 0.620
DDD_0073
OsmC-like protein.
  
  
 0.561
DDD_2632
Organic hydroperoxide reductase.
  
  
 0.561
DDD_3502
Putative peptidoglycan-binding protein, LysM family.
   
  
 0.526
DDD_0746
Site-specific recombinase, phage integrase family/ribosomal subunit interface protein.
   
    0.513
DDD_2071
Sigma-54 modulation protein-like ribosome-associated protein.
   
    0.513
DDD_3141
Site-specific recombinase, phage integrase family/ribosomal subunit interface protein.
   
    0.513
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.507
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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