Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DDD_3333phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the MtfA family. (253 aa)    
Predicted Functional Partners:
DDD_0112
DUF980 domain containing protein; Belongs to the MtfA family.
  
     0.716
DDD_3334
Putative S1/P1 nuclease.
       0.603
DDD_3332
Putative integral membrane protein.
       0.590
DDD_1472
Membrane protein.
  
     0.452
DDD_3331
Hypothetical protein.
       0.445
DDD_1467
ATPase involved in DNA repair.
  
     0.406
DDD_1409
Putative lipoprotein.
  
     0.405
Your Current Organism:
Nonlabens dokdonensis
NCBI taxonomy Id: 592029
Other names: Donghaeana dokdonensis DSW-6, N. dokdonensis DSW-6, Nonlabens dokdonensis DSW-6, Nonlabens dokdonensis str. DSW-6, Nonlabens dokdonensis strain DSW-6, Persicivirga dokdonensis DSW-6
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