STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmsPBiofilm formation regulator HmsP; HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)    
Predicted Functional Partners:
barA
Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
ANA31263.1
Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
ANA30259.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
ANA27671.1
Histidine kinase; Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.974
gmr_3
RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.973
ycdT
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.961
ANA31312.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.950
pleD
Diguanylate cyclase; Catalyzes the formation of cyclic di-3',5'-guanylate from guanosine triphosphate; involved in the regulation of cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.913
ANA30425.1
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.913
ANA29411.1
Diguanylate cylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.902
Your Current Organism:
Salmonella enterica diarizonae
NCBI taxonomy Id: 59204
Other names: ATCC 43973, CCUG 30040, CIP 82.31, DSM 14847, NCTC 10060, S. enterica subsp. diarizonae, Salmonella cholerae-suis subsp. diarizonae, Salmonella choleraesuis subsp. diarizonae, Salmonella enterica IIIb, Salmonella enterica serovar IIIb, Salmonella enterica subsp. IIIb, Salmonella enterica subsp. Subsp. IIIb, Salmonella enterica subsp. diarizonae
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