STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ75497.1Transmembrane transcriptional regulator (anti-sigma factor RsiW). (280 aa)    
Predicted Functional Partners:
SDZ75524.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.960
SDZ75538.1
Predicted lipoprotein with conserved Yx(FWY)xxD motif.
 
     0.918
SEA71195.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.840
SEA70677.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.823
SEA70660.1
Predicted lipoprotein with conserved Yx(FWY)xxD motif.
 
     0.749
SEA71105.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.733
SEA52429.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.677
SDZ73489.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.632
SDZ86450.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.632
SDZ93689.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.632
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.