STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ73452.1Uncharacterized membrane protein YckC, RDD family. (179 aa)    
Predicted Functional Partners:
SDZ73429.1
Hypothetical protein; Belongs to the LOG family.
       0.825
SDZ73463.1
Protein of unknown function.
     
 0.802
SDZ73440.1
Diacylglycerol kinase (ATP); Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
       0.783
SDZ73477.1
Protein of unknown function.
       0.728
SDZ73489.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.728
SDZ94975.1
Hypothetical protein.
 
     0.706
SEA55277.1
Hypothetical protein.
  
   
 0.697
SEA19361.1
Ribosome-associated heat shock protein Hsp15.
  
    0.693
SEA30287.1
Phasin family protein.
  
     0.629
SEA15873.1
Hypothetical protein.
  
     0.617
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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