STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ86344.1Protein glycosylation ligase. (537 aa)    
Predicted Functional Partners:
SEA35390.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.856
SDZ82729.1
Protein of unknown function.
  
    0.705
SEA80491.1
VanZ like family protein.
 
     0.677
SEA13991.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.605
SEA14010.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.577
SEA15811.1
Recombination protein RecT.
  
    0.571
SEA34668.1
Inorganic triphosphatase YgiF, contains CYTH and CHAD domains.
  
     0.567
SEA46525.1
Hypothetical protein.
  
     0.546
SEA67011.1
Site-specific recombinase.
  
     0.541
SDZ82707.1
Protein of unknown function.
  
     0.530
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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