STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA04094.1alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family. (370 aa)    
Predicted Functional Partners:
SEA04120.1
Transcriptional regulator, IclR family.
       0.642
SEA56846.1
methylmalonyl-CoA mutase.
    
 0.601
SEA04167.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
   
  0.592
SEA04210.1
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
  0.560
SEA04143.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.523
argH
Argininosuccinate lyase.
 
      0.512
SEA04297.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  0.477
SEA83131.1
Hypothetical protein.
  
     0.442
SEA83145.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.434
SEA04370.1
acyl-CoA dehydrogenase.
 
  0.405
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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