STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA08238.1Haem-binding uptake, Tiki superfamily, ChaN. (274 aa)    
Predicted Functional Partners:
SDZ72946.1
ATP-dependent helicase/nuclease subunit B.
  
     0.572
SEA82283.1
Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.562
SEA82424.1
Iron complex outermembrane recepter protein.
  
  
 0.562
SEA08267.1
Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX.
       0.554
SEA08289.1
Two-component system, NarL family, nitrate/nitrite response regulator NarL.
       0.554
SEA25739.1
Protein of unknown function.
  
     0.544
SDZ72956.1
ATP-dependent helicase/nuclease subunit A.
  
     0.524
SDZ94032.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
 
  
  0.515
SDZ74319.1
TRAP-type uncharacterized transport system, substrate-binding protein.
  
    0.513
SEA08728.1
Hypothetical protein.
 
     0.510
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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