STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA64048.1Type IV secretion system protein VirB10. (423 aa)    
Predicted Functional Partners:
SEA64027.1
Type IV secretion system protein VirB9.
 0.997
SEA76384.1
Type IV secretion system protein VirB9.
 0.987
SEA89036.1
Type IV secretion system protein VirB9.
 0.987
SEA64005.1
Type IV secretion system protein VirB5.
  
 0.975
SEA63982.1
Type IV secretion system protein TrbL.
 
  
 0.969
SEA76492.1
Type IV secretion system protein VirB4.
 
 
 0.948
SEA88319.1
Type IV secretion system protein VirB4.
 
 
 0.941
SEA89111.1
Type IV secretion system protein VirB4.
 
 
 0.941
SEA88302.1
P-type conjugative transfer protein TrbJ.
 
  
 0.912
SEA89092.1
P-type conjugative transfer protein TrbJ.
 
  
 0.912
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.