STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA66987.1Kef-type K+ transport system, membrane component KefB. (418 aa)    
Predicted Functional Partners:
SEA66962.1
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
     0.949
SDZ74264.1
Zinc carboxypeptidase.
  
    0.723
SDZ73463.1
Protein of unknown function.
  
     0.721
SEA48947.1
Predicted PurR-regulated permease PerM.
 
    0.701
SDZ72946.1
ATP-dependent helicase/nuclease subunit B.
  
     0.679
SEA97975.1
Putative glutamine amidotransferase.
 
     0.678
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
     
 0.652
SEA83281.1
Oligoribonuclease NrnB or cAMP/cGMP phosphodiesterase, DHH superfamily.
 
     0.642
SEA55578.1
Hypothetical protein.
  
     0.618
SEA45093.1
HemY protein.
  
     0.573
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.