STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA76340.1Hypothetical protein. (84 aa)    
Predicted Functional Partners:
SEA76362.1
Type IV secretion system protein VirB10.
     0.940
SEA76469.1
P-type conjugative transfer protein TrbJ.
 
     0.937
SEA76424.1
Type IV secretion system protein TrbL.
 
     0.926
SEA76384.1
Type IV secretion system protein VirB9.
     0.909
SEA76401.1
Type IV secretion system protein VirB5.
     0.880
SEA76515.1
Type IV secretion system protein VirB3.
 
     0.873
SEA76539.1
Type IV secretion system protein VirB2.
 
     0.832
SEA76492.1
Type IV secretion system protein VirB4.
 
     0.825
SEA88302.1
P-type conjugative transfer protein TrbJ.
 
     0.784
SEA89092.1
P-type conjugative transfer protein TrbJ.
 
     0.784
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.