STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA88319.1Type IV secretion system protein VirB4. (814 aa)    
Predicted Functional Partners:
SEA88343.1
Type IV secretion system protein VirB2.
 
 0.981
SEA88302.1
P-type conjugative transfer protein TrbJ.
  
 0.973
SEA88329.1
Type IV secretion system protein VirB3.
  
 0.970
SEA88284.1
Type IV secretion system protein TrbL.
 
  
 0.964
SEA88360.1
Type IV secretion system protein VirB11.
 
  
 0.964
SEA88396.1
Type IV secretion system protein VirD4.
  
 0.945
SEA64048.1
Type IV secretion system protein VirB10.
 
 
 0.941
SEA89020.1
Type IV secretion system protein VirB10.
 
 
 0.941
SEA88378.1
Ribbon-helix-helix protein, copG family.
 
     0.935
SEA64027.1
Type IV secretion system protein VirB9.
 
 
 0.934
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.