STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA89092.1P-type conjugative transfer protein TrbJ. (241 aa)    
Predicted Functional Partners:
SEA89146.1
Type IV secretion system protein VirB2.
 
  
 0.978
SEA89111.1
Type IV secretion system protein VirB4.
  
 0.977
SEA89126.1
Type IV secretion system protein VirB3.
 
  
 0.974
SEA89020.1
Type IV secretion system protein VirB10.
 
  
 0.973
SEA89075.1
Type IV secretion system protein TrbL.
 
  
 0.970
SEA89036.1
Type IV secretion system protein VirB9.
 
  
 0.968
SEA89055.1
Type IV secretion system protein VirB5.
 
  
 0.968
SEA89195.1
Type IV secretion system protein VirD4.
 
   
 0.949
SEA89174.1
Hypothetical protein.
 
     0.948
SEA89154.1
Type IV secretion system protein VirB11.
 
  
 0.942
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.