STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA91225.1Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (287 aa)    
Predicted Functional Partners:
SEA91246.1
Type IV pilus assembly protein PilC.
 
  
 0.978
SEA91261.1
Type IV pilus assembly protein PilB.
 
 
 0.971
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.904
SDZ86729.1
General secretion pathway protein F.
 
  
 0.874
SEA63250.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
 
 
 0.874
SEA16680.1
Type II secretion system protein E (GspE).
 
 
 0.872
SEA07971.1
Pilus retraction ATPase PilT.
 
   
 0.843
SEA75964.1
Tfp pilus assembly protein PilT, pilus retraction ATPase.
 
   
 0.805
SEA25713.1
DNA processing protein.
  
  
 0.789
SDZ85096.1
Twitching motility protein PilU.
  
   
 0.782
Your Current Organism:
Acidovorax soli
NCBI taxonomy Id: 592050
Other names: A. soli, Acidovorax soli Choi et al. 2010, Acidovorax sp. BL21, DSM 25157, JCM 15909, KCTC 22399, strain BL21
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.