STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU68558.1Transcriptional regulator, GntR family; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: eta:ETA_22230 GntR-family transcriptional regulatory protein; SMART: regulatory protein GntR HTH. (251 aa)    
Predicted Functional Partners:
hutH
TIGRFAM: histidine ammonia-lyase; KEGG: eta:ETA_22240 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
  
 0.856
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.848
hutI
TIGRFAM: imidazolonepropionase; KEGG: eta:ETA_22200 imidazolonepropionase; PFAM: amidohydrolase.
 
  
 0.779
ADU67910.1
Transcriptional regulator, XRE family; TIGRFAM: nicotinamide-nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: helix-turn-helix domain protein; KEGG: sfv:SFV_4424 nicotinamide-nucleotide adenylyltransferase; SMART: helix-turn-helix domain protein.
   
  
 0.776
ADU68559.1
PFAM: protein of unknown function DUF886; KEGG: eta:ETA_22220 conserved hypothetical protein YdjR.
 
  
 0.763
ADU68567.1
KEGG: kpe:KPK_3142 putative histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
  
 0.643
ADU68562.1
KEGG: spe:Spro_2076 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase.
 
  
 0.563
ADU68560.1
KEGG: eta:ETA_22210 N-formimino-L-glutamate deiminase; TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase.
 
  
 0.552
ADU69770.1
Transcriptional regulator, GntR family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: pct:PC1_0886 phophonate C-P lyase system transcriptional regulator PhnF, GntR family; SMART: regulatory protein GntR HTH.
  
   
 0.533
ADU69091.1
Transcriptional regulator, XRE family; KEGG: ctu:Ctu_22310 uncharacterized HTH-type transcriptional regulator YdcN; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.508
Your Current Organism:
Pantoea sp. At9b
NCBI taxonomy Id: 592316
Other names: P. sp. At-9b, Pantoea sp. At-9b
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