STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU69819.1KEGG: pwa:Pecwa_2461 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein. (176 aa)    
Predicted Functional Partners:
ADU69818.1
KEGG: pwa:Pecwa_2460 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
 0.998
ADU70755.1
KEGG: spe:Spro_1784 hypothetical protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
 0.980
ADU69633.1
KEGG: eta:ETA_18630 OmpA family protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
  
 0.970
ADU69820.1
KEGG: pwa:Pecwa_2462 type VI secretion-associated protein, ImpA family; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.968
ADU69808.1
PFAM: virulence protein SciE type; KEGG: pwa:Pecwa_2453 virulence protein SciE type.
 
   0.959
ADU69817.1
KEGG: ctu:Ctu_00760 protein hcp1; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796.
 
 
 0.959
ADU69823.1
KEGG: pwa:Pecwa_2465 type IV / VI secretion system protein, DotU family; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
  
 0.959
ADU69824.1
KEGG: pwa:Pecwa_2466 type VI secretion protein, VC_A0114 family; TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876.
 
  
 0.950
ADU69802.1
KEGG: pwa:Pecwa_2439 type VI secretion system Vgr family protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein.
 
  
 0.931
ADU71045.1
KEGG: spe:Spro_3019 hypothetical protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796.
 
 
 0.931
Your Current Organism:
Pantoea sp. At9b
NCBI taxonomy Id: 592316
Other names: P. sp. At-9b, Pantoea sp. At-9b
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