STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
speBAgmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily. (306 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.940
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
  
 
 0.936
ADU69854.1
Glutamate--putrescine ligase; KEGG: spe:Spro_3216 glutamine synthetase catalytic region; PFAM: glutamine synthetase catalytic region.
  
  
 0.930
ADU69260.1
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ara:Arad_7959 agmatinase; Belongs to the arginase family.
  
  
 
0.927
ADU69256.1
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rso:RSp1578 agmatinase; Belongs to the arginase family.
  
  
 
0.926
ADU70535.1
KEGG: eta:ETA_28500 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein.
    
 0.913
ADU70314.1
Diamine N-acetyltransferase; KEGG: cko:CKO_01578 hypothetical protein; PFAM: GCN5-related N-acetyltransferase.
     
 0.906
ADU70502.1
PFAM: protein of unknown function DUF937; KEGG: eta:ETA_28240 conserved hypothetical protein (DUF937).
       0.664
ADU70504.1
KEGG: ent:Ent638_3122 HlyD family type I secretion membrane fusion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
       0.480
ADU70505.1
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: ent:Ent638_3121 ABC transporter related; SMART: AAA ATPase.
       0.480
Your Current Organism:
Pantoea sp. At9b
NCBI taxonomy Id: 592316
Other names: P. sp. At-9b, Pantoea sp. At-9b
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