STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW48955.1PAS domain S-box-containing protein. (357 aa)    
Predicted Functional Partners:
SCW48971.1
Two component transcriptional regulator, LuxR family.
 0.998
SCW41093.1
PAS domain S-box-containing protein.
  
 0.996
SCW50177.1
PAS domain S-box-containing protein.
  
 0.995
SCW65783.1
Two component transcriptional regulator, LuxR family.
 
 0.993
SCW67285.1
Two component transcriptional regulator, LuxR family.
 
 0.993
SCW71411.1
Two component transcriptional regulator, LuxR family.
 
 0.993
SCW87973.1
Two component transcriptional regulator, LuxR family.
 
 0.993
SCW70604.1
Two component transcriptional regulator, LuxR family; Manually curated.
 
 0.992
SCW34869.1
Two component transcriptional regulator, LuxR family.
 
 0.991
SCW65701.1
Two component transcriptional regulator, LuxR family.
 
 0.991
Your Current Organism:
Pseudomonas peli
NCBI taxonomy Id: 592361
Other names: DSM 17833, LMG 23201, LMG:23201, P. peli, Pseudomonas peli Vanparys et al. 2006, Pseudomonas sp. R-20815, strain R-20805
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