STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW83687.1Diguanylate cyclase with GAF sensor. (342 aa)    
Predicted Functional Partners:
SCW64630.1
Multi-sensor hybrid histidine kinase.
 
 0.961
SCW43297.1
Two component transcriptional regulator, LuxR family.
 
 0.955
SCW68287.1
Signal transduction histidine kinase.
 
 0.952
SCW41093.1
PAS domain S-box-containing protein.
 0.941
SCW30694.1
Signal transduction histidine kinase.
 
 0.932
SCW79603.1
Diguanylate cyclase (GGDEF) domain-containing protein; Manually curated.
 
0.928
SCW50177.1
PAS domain S-box-containing protein.
 0.925
SCW51612.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  
 0.925
SCW68109.1
Response regulator receiver modulated metal dependent phosphohydrolase.
 
 0.924
SCW45695.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.915
Your Current Organism:
Pseudomonas peli
NCBI taxonomy Id: 592361
Other names: DSM 17833, LMG 23201, LMG:23201, P. peli, Pseudomonas peli Vanparys et al. 2006, Pseudomonas sp. R-20815, strain R-20805
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