STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW85349.1Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (535 aa)    
Predicted Functional Partners:
SCW83064.1
Dipeptide transport system permease protein.
 
 0.992
SCW85333.1
Microcin C transport system permease protein.
 
 0.987
SCW85341.1
Microcin C transport system permease protein.
 
 0.985
SCW85328.1
Microcin C transport system substrate-binding protein.
 
 
 0.981
SCW85320.1
Microcin C transport system substrate-binding protein.
 
 
 0.976
SCW83056.1
Dipeptide transport system permease protein.
 
 0.949
SCW85359.1
Enoyl-[acyl-carrier-protein] reductase [NADH].
  
    0.741
SCW50397.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.738
SCW83049.1
Dipeptide transport system substrate-binding protein.
 
 
 0.717
SCW83079.1
Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.678
Your Current Organism:
Pseudomonas peli
NCBI taxonomy Id: 592361
Other names: DSM 17833, LMG 23201, LMG:23201, P. peli, Pseudomonas peli Vanparys et al. 2006, Pseudomonas sp. R-20815, strain R-20805
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.