Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
mbhKMembrane bound hydrogenase, MbhK subunit (MbhK). (188 aa)    
Predicted Functional Partners:
mbhJ
Membrane bound hydrogenase, MbhJ subunit (MbhJ).
 
 
 
 0.991
mbhI
Membrane bound hydrogenase, MbhI subunit (MbhI); 2 probable transmembrane helices predicted by modhmm.
   
 
 0.989
mbhN
Membrane bound hydrogenase, MbhN subunit (MbhN).
 
 
   0.985
mbhL
Membrane bound hydrogenase, MbhL subunit (MbhL).
 
 
 
 0.984
mbhF
Membrane bound hydrogenase, MbhF subunit (MbhF); 4 probable transmembrane helices predicted by modhmm.
 
 
   0.981
mbhC
Membrane bound hydrogenase, MbhC subunit (MbhC); 3 probable transmembrane helices predicted by modhmm.
 
 
   0.981
mbhH
Membrane bound hydrogenase, MbhH subunit (MbhH); 14 probable transmembrane helices predicted by modhmm.
 
 
   0.980
mbhE
Membrane bound hydrogenase, MbhE subunit (MbhE); 2 probable transmembrane helices predicted by modhmm.
 
 
   0.979
mbhG
Membrane bound hydrogenase, MbhG subunit (MbhG); 3 probable transmembrane helices predicted by modhmm.
   
   0.977
mbhB
Membrane bound hydrogenase, MbhB subunit (MbhB); 3 probable transmembrane helices predicted by modhmm.
   
   0.972
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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