Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_00714Fe-4S ferredoxin, iron-sulfur binding. (142 aa)    
Predicted Functional Partners:
mhy2F
Formate hydrogenlyase II subunit F (Mhy2F).
 
 0.970
mhy1F
Formate hydrogenlyase I subunit F (Mhy1F).
 
 0.959
gltD-1
Glutamate synthase [NADPH] small chain (gltD).
  
  
 0.820
TGAM_0069
7Fe ferredoxin.
  
  
 0.806
mbxJ
Membrane bound oxidoreductase, MbxJ subunit (MbxJ); Belongs to the complex I 20 kDa subunit family.
  
 0.805
mbxL
Membrane bound oxidoreductase, MbxL subunit (MbxL); Belongs to the complex I 49 kDa subunit family.
  
 0.802
mbc1D
Membrane bound complex 1, subunit D (Mbc1D); 6 probable transmembrane helices predicted by modhmm.
  
 
 0.801
mhy2C1
Formate hydrogenlyase II subunit C (Mhy2C1); 14 probable transmembrane helices predicted by modhmm.
  
 
 0.792
tfs
Transcription elongation factor S (TFS_arch); Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
  
 0.787
mbc2D
Membrane bound complex 2, subunit D (Mbc2D); 6 probable transmembrane helices predicted by modhmm.
  
 
 0.745
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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