Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0103Signal peptidase, peptidase S26B; 1 probable transmembrane helix predicted by modhmm. (138 aa)    
Predicted Functional Partners:
TGAM_2126
Signal peptidase, peptidase S26B; 2 probable transmembrane helices predicted by modhmm.
  
  
  0.938
TGAM_0495
Signal peptidase I, S26B/S24 family; Serine protease; 4 probable transmembrane helices predicted by modhmm.
     
  0.900
TGAM_0104
Conserved archaeal hypothetical protein.
       0.887
TGAM_0105
TRP-repeat-containing protein.
  
 
 0.828
mdp
Membrane dipeptidase (mdp).
       0.823
TGAM_0109
SAM-dependent methyltransferase.
       0.575
TGAM_0102
lplA-like lipoate-protein ligase A related.
 
     0.544
TGAM_0107
Conserved hypothetical protein; Belongs to DUF257 family.
       0.525
rnhB
Ribonuclease HII (rnhB); Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.510
tip49
DNA helicase TIP49-like protein, TBP-interacting protein (Tip49).
  
     0.488
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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