Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0195Bacterial type II secretion system protein F; 5 probable transmembrane helices predicted by modhmm. (303 aa)    
Predicted Functional Partners:
TGAM_0196
Bacterial type II secretion system protein F; 4 probable transmembrane helices predicted by modhmm.
 
  
0.990
TGAM_0197
AAA family ATPase, type II secretion system protein, containing DOD-type homing endonuclease; Intein span: 515 - 1037.
 
  
 0.984
TGAM_0199
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
     
 0.923
TGAM_0198
Conserved hypothetical protein; 2 probable transmembrane helices predicted by modhmm.
       0.914
TGAM_0200
Conserved hypothetical protein.
       0.841
TGAM_0201
GTP-binding protein, HSR1-related GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.823
TGAM_0202
SAM-dependent RNA methylase, putative; Belongs to UPF0020 family, contains 1 THUMP domain.
       0.823
flaI
Flagella-related protein I, type II/IV secretion system protein E (flaI).
 
  
 0.769
TGAM_1372
Conserved hypothetical protein; Belongs to DUF192 family; Belongs to the UPF0127 family.
 
     0.573
TGAM_0203
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.538
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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