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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhxProline dehydrogenase, delta subunit (pdhx). (90 aa)    
Predicted Functional Partners:
pdhf
Proline dehydrogenase, gamma subunit (pdhf).
 
  
 0.943
pdha
Proline dehydrogenase, alpha subunit (pdha).
 
   
 0.938
pdhb
Proline dehydrogenase, beta subunit (pdhb).
 
 
 0.935
soxB
Sarcosine oxidase, subunit beta (SoxB).
 
 
 0.843
cydA
Cytochrome bd ubiquinol oxidase, subunit I (cydA); 9 probable transmembrane helices predicted by modhmm.
  
 
 0.552
TGAM_1236
Conserved hypothetical protein; Belongs to DUF1641 family.
  
    0.508
pyrH
Uridylate kinase (pyrH); Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.504
rpl3P
LSU ribosomal protein L3P (rpl3P); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
   0.407
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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