Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
appBABC-type dipeptide/oligopeptide transport permease protein appB (appB); 6 probable transmembrane helices predicted by modhmm. (326 aa)    
Predicted Functional Partners:
appC
ABC-type dipeptide/oligopeptide transport permease protein appC (appC); 6 probable transmembrane helices predicted by modhmm.
 0.999
appA
ABC-type dipeptide/oligopeptide transport periplasmic component appA (appA).
 0.995
oppC
Oligopeptide/dipeptide ABC transporter, permease protein (oppC/dppC); 6 probable transmembrane helices predicted by modhmm.
 
 0.929
dppC
Peptide/nickel transport system permease protein; 6 probable transmembrane helices predicted by modhmm.
 
 
 0.916
TGAM_0382
Hypothetical protein; 8 probable transmembrane helices predicted by modhmm.
       0.899
TGAM_0381
ATPase, BadF/BadG/BcrA/BcrD type.
     
 0.898
dppD-2
ABC-type dipeptide/oligopeptide transport system, ATPase component (dppD/oppD).
 
 
 0.878
dppD
ABC-type dipeptide/oligopeptide transport system, ATPase component (dppD/oppD).
 
 
 0.876
TGAM_0152
ABC-type transport system, permease component; 6 probable transmembrane helices predicted by modhmm.
 
 
 0.830
TGAM_0876
ABC-type periplasmic dipeptide transport protein; 1 probable transmembrane helix predicted by modhmm.
 
 
 0.830
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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