Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
glgAGlycogen synthase (glgA). (448 aa)    
Predicted Functional Partners:
glgP
Alpha-glucan phosphorylase (glgP).
 
  
 0.968
TGAM_0599
Maltogenic alpha-amylase.
 
  
 0.952
TGAM_1711
Glycosyl hydrolase family 57, possibly alpha-amylase; Belongs to the glycosyl hydrolase 57 family.
 
  0.944
amyA-2
Alpha-amylase (amyA).
 
 
 0.940
galU
UTP-glucose-1-phosphate uridylyltransferase (galU).
    
 0.927
argF
Ornithine carbamoyltransferase (argF); Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.924
trmB-1
Transcription regulator, TrmB-like protein (TrmB).
       0.914
malE
Maltose-binding periplasmic protein precursor (maltodextrin-binding protein) (malE); 1 probable transmembrane helix predicted by modhmm.
 
     0.813
pulhA
Pullulan hydrolase type III (pulhA); 1 probable transmembrane helix predicted by modhmm.
 
  
 0.770
malF
Maltose transport system permease protein (malF); 5 probable transmembrane helices predicted by modhmm.
 
  
 0.753
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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