Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0645GTPase, NOG1/MMR-HSR1 family; Belongs to G-protein superfamily. (357 aa)    
Predicted Functional Partners:
rps8E
SSU ribosomal protein S8E (rps8E).
   
 
 0.902
rpl30P
LSU ribosomal protein L30P (rpl30P).
  
 
 0.884
rpl10E-1
LSU ribosomal protein L10E (rpl10E); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.872
TGAM_0852
Nonsense-mediated mRNA decay protein, NMD3-like protein.
 
 
 0.871
TGAM_0464
pre-mRNA splicing, snoRNA binding protein, NOP5/NOP56 related.
   
 
 0.870
TGAM_0201
GTP-binding protein, HSR1-related GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
 
 0.861
TGAM_0279
Ribosome subunit biogenesis protein, putative; Belongs to UPF0113 family.
   
 
 0.849
TGAM_0642
Sugar-phosphate nucleotydyltransferase.
 
  
 0.824
rpl3P
LSU ribosomal protein L3P (rpl3P); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.824
TGAM_1498
Brix-domain ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.
   
 
 0.818
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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