Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_0786Conserved hypothetical protein. (76 aa)    
Predicted Functional Partners:
TGAM_0787
RNA methylase, putative; Belongs to UPF0020 family.
       0.704
TGAM_0788
Protein prenyltransferase, putative; Contains Protein prenylyltransferase (SSF48439) domain.
       0.501
TGAM_0789
Conserved hypothetical protein.
       0.497
TGAM_0785
Conserved hypothetical protein, C-term fragment; Possibly a pseudo-gene, start codon in N-terminus is missing.
       0.488
TGAM_0790
Conserved hypothetical protein; Belongs to UPF0047 family.
       0.430
TGAM_0791
D-aminopeptidase; Belongs to M55 MEROPS petidase family.
       0.424
TGAM_0792
Conserved hypothetical protein.
       0.405
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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