Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0837ABC-type transport system, ATPase component, putative multidrug/lipooligosaccharide transporter. (308 aa)    
Predicted Functional Partners:
TGAM_0836
ABC-type multidrug transporter permease protein; 6 probable transmembrane helices predicted by modhmm.
 
  
 0.960
TGAM_0838
Sodium symporter, putative arsenite efflux pump ACR3; 10 probable transmembrane helices predicted by modhmm.
 
     0.637
TGAM_1698
ABC-type transporter, ATP-binding component; 6 probable transmembrane helices predicted by modhmm.
 
  
 0.608
TGAM_0839
Conserved hypothetical protein.
       0.520
TGAM_0840
Predicted permease; Belongs to DUF81 family; 9 probable transmembrane helices predicted by modhmm.
       0.510
TGAM_1655
Conserved hypothetical protein; 6 probable transmembrane helices predicted by modhmm.
 
 
 0.486
TGAM_1488
ABC-type transport system, permease component; Belongs to family 2 of ABC transporters; 6 probable transmembrane helices predicted by modhmm.
 
  
 0.479
matE-1
Multi antimicrobial extrusion protein MatE (matE); 12 probable transmembrane helices predicted by modhmm.
  
  
 0.410
matE-2
Multi antimicrobial extrusion protein MatE (matE); 9 probable transmembrane helices predicted by modhmm.
  
  
 0.410
matE-3
Multi antimicrobial extrusion protein MatE (matE); 12 probable transmembrane helices predicted by modhmm.
  
  
 0.410
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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