Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TGAM_0839Conserved hypothetical protein. (113 aa)    
Predicted Functional Partners:
TGAM_0840
Predicted permease; Belongs to DUF81 family; 9 probable transmembrane helices predicted by modhmm.
       0.787
TGAM_0838
Sodium symporter, putative arsenite efflux pump ACR3; 10 probable transmembrane helices predicted by modhmm.
       0.720
TGAM_0841
DNA-binding protein.
       0.639
TGAM_0836
ABC-type multidrug transporter permease protein; 6 probable transmembrane helices predicted by modhmm.
       0.520
TGAM_0837
ABC-type transport system, ATPase component, putative multidrug/lipooligosaccharide transporter.
       0.520
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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