Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_0840Predicted permease; Belongs to DUF81 family; 9 probable transmembrane helices predicted by modhmm. (279 aa)    
Predicted Functional Partners:
TGAM_0839
Conserved hypothetical protein.
       0.787
TGAM_0838
Sodium symporter, putative arsenite efflux pump ACR3; 10 probable transmembrane helices predicted by modhmm.
 
     0.762
TGAM_1749
Conserved hypothetical protein; Possibly a cell adhesion protein. Contains 9 APHP/CARDB and 2 PKD domains; 1 probable transmembrane helix predicted by modhmm.
  
     0.665
TGAM_0836
ABC-type multidrug transporter permease protein; 6 probable transmembrane helices predicted by modhmm.
 
     0.610
TGAM_2014
AAA family ATPase, type II secretion system protein.
  
     0.602
TGAM_0841
DNA-binding protein.
     
 0.600
flaD/E
Flagella accessory protein D or E (flaD/E).
  
     0.592
TGAM_1675
Arginase related protein; Belongs to the arginase family.
 
     0.580
TGAM_1522
Conserved hypothetical protein.
  
     0.568
TGAM_0661
Conserved hypothetical protein; 3 probable transmembrane helices predicted by modhmm.
  
     0.563
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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