Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
TGAM_0841DNA-binding protein. (112 aa)    
Predicted Functional Partners:
TGAM_0839
Conserved hypothetical protein.
       0.639
TGAM_0840
Predicted permease; Belongs to DUF81 family; 9 probable transmembrane helices predicted by modhmm.
     
 0.600
TGAM_0838
Sodium symporter, putative arsenite efflux pump ACR3; 10 probable transmembrane helices predicted by modhmm.
  
  
 0.564
TGAM_0842
Dinitrogenase iron-molybdenum cofactor, NIF B/Y/X related.
       0.548
tehA
C4-dicarboxylate transporter/malic acid transport protein (TehA/Mae1); 10 probable transmembrane helices predicted by modhmm.
       0.428
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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