Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0876ABC-type periplasmic dipeptide transport protein; 1 probable transmembrane helix predicted by modhmm. (715 aa)    
Predicted Functional Partners:
oppD
Oligopeptide/dipeptide ABC transporter, permease protein (oppD/dppB); 6 probable transmembrane helices predicted by modhmm.
 
 
 0.982
oppC
Oligopeptide/dipeptide ABC transporter, permease protein (oppC/dppC); 6 probable transmembrane helices predicted by modhmm.
 
 
 0.977
dppD-2
ABC-type dipeptide/oligopeptide transport system, ATPase component (dppD/oppD).
 
 
 0.940
dppF-2
ABC-type dipeptide/oligopeptide transport system, ATPase component (dppF/oppF).
 
 
 0.924
dppB
Peptide/nickel transport system permease protein; 6 probable transmembrane helices predicted by modhmm.
 
 
 0.844
appC
ABC-type dipeptide/oligopeptide transport permease protein appC (appC); 6 probable transmembrane helices predicted by modhmm.
 
 
 0.844
dppC
Peptide/nickel transport system permease protein; 6 probable transmembrane helices predicted by modhmm.
 
 
 0.833
appB
ABC-type dipeptide/oligopeptide transport permease protein appB (appB); 6 probable transmembrane helices predicted by modhmm.
 
 
 0.830
TGAM_0152
ABC-type transport system, permease component; 6 probable transmembrane helices predicted by modhmm.
 
 
 0.751
TGAM_0153
ABC-type transport system, permease component; 5 probable transmembrane helices predicted by modhmm.
 
 
 0.744
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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