Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0900Conserved hypothetical protein; 7 probable transmembrane helices predicted by modhmm. (298 aa)    
Predicted Functional Partners:
TGAM_0899
UbiA prenyltransferase family protein; 7 probable transmembrane helices predicted by modhmm.
       0.899
TGAM_0901
Glycosyltransferase, family 1.
       0.829
TGAM_0898
Transcription regulator, HTH/TrmB family.
       0.771
TGAM_0586
Conserved hypothetical protein; 2 probable transmembrane helices predicted by modhmm.
       0.645
TGAM_0897
Prokaryotic ATPase, AAA superfamily; Contains Archaeal ATPase domain (PF01637).
       0.417
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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