Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TGAM_0946Conserved hypothetical protein. (100 aa)    
Predicted Functional Partners:
arsA
Arsenical pump-driving ATPase (arsA).
       0.914
TGAM_0944
Conserved hypothetical protein.
       0.909
TGAM_0943
Conserved hypothetical protein.
       0.905
TGAM_0947
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.895
cstA
Carbon starvation protein A (cstA); 14 probable transmembrane helices predicted by modhmm.
       0.860
TGAM_0950
Lysophospholipase, putative.
       0.858
TGAM_0949
Nucleotide binding protein, putative, containing PIN domain.
       0.800
pycB
Pyruvate carboxylase subunit B (pycB).
       0.633
TGAM_0948
Transcription regulator, SpoVT/AbrB family.
       0.620
TGAM_0951
Conserved hypothetical protein; 2 probable transmembrane helices predicted by modhmm.
       0.592
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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