STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_0959Carbon-nitrogen hydrolase. (263 aa)    
Predicted Functional Partners:
TGAM_0957
Calcineurin-like phosphoesterase, exonuclease sbcD related protein.
       0.708
pfpI
Peptidase C56, intracellular protease PfpI family (PfpI).
  
 
 0.556
pstB
ABC-type phosphate transport system, ATPase component (pstB); Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
   
  
 0.519
pyrD
Dihydroorotase dehydrogenase (pyrD); Catalyzes the conversion of dihydroorotate to orotate.
 
 
 0.478
lysA
Diaminopimelate decarboxylase (lysA).
 
   
 0.469
nadC-2
Nicotinate-nucleotide pyrophosphorylase (Quinolinate phosphoribosyltransferase) (nadC); Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
  
  
 0.458
pncA
Pyrazinamidase/nicotinamidase (pncA).
  
 
 0.456
TGAM_0307
Pyridoxal phosphate-dependent aminotransferase, class III family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.442
nadC-1
Nicotinate-nucleotide pyrophosphorylase (nadC).
     
 0.441
TGAM_0179
Pyridoxal phosphate-dependent aminotransferase, class III family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.429
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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