Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
soxBSarcosine oxidase, subunit beta (SoxB). (386 aa)    
Predicted Functional Partners:
soxA
Sarcosine oxidase, subunit alpha (SoxA).
 
 
 0.997
pdha
Proline dehydrogenase, alpha subunit (pdha).
 
 0.964
gcvT
Glycine cleavage system T protein (aminomethyltransferase) (gcvT); The glycine cleavage system catalyzes the degradation of glycine.
 
 
 0.959
pdhx
Proline dehydrogenase, delta subunit (pdhx).
 
 
 0.885
pdhf
Proline dehydrogenase, gamma subunit (pdhf).
 
  
 0.837
TGAM_0964
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.832
TGAM_0963
Sodium:solute symporter family protein; 12 probable transmembrane helices predicted by modhmm; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.831
TGAM_0960
SAM-dependent methyltransferase, putative.
     
 0.673
TGAM_0965
Conserved hypothetical protein.
       0.660
sgaA
Aminotransferase, class V, putative serine-glyoxylate aminotransferase (sgaA).
 
 
 0.539
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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