Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TGAM_0963Sodium:solute symporter family protein; 12 probable transmembrane helices predicted by modhmm; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (538 aa)    
Predicted Functional Partners:
TGAM_0964
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.914
soxB
Sarcosine oxidase, subunit beta (SoxB).
  
    0.831
soxA
Sarcosine oxidase, subunit alpha (SoxA).
     
 0.827
TGAM_0965
Conserved hypothetical protein.
       0.825
TGAM_1855
Amino acid transporter; 12 probable transmembrane helices predicted by modhmm.
  
  
 0.653
TGAM_0308
Sodium/alanine symporter; 13 probable transmembrane helices predicted by modhmm.
  
   
 0.572
purR
Adenine phosphoribosyltransferase, fused to N-terminal DNA binding domain (purR).
   
  
 0.565
TGAM_1715
Na+/H+ antiporter, NhaC family; 13 probable transmembrane helices predicted by modhmm.
 
  
 0.514
TGAM_1707
Sodium-dependent transporter, SNF family; 12 probable transmembrane helices predicted by modhmm; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
  
 0.507
TGAM_0093
ABC-type amino acid transport system, ATPase component.
  
  
 0.485
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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