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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_0963Sodium:solute symporter family protein; 12 probable transmembrane helices predicted by modhmm; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (538 aa)    
Predicted Functional Partners:
TGAM_0964
Conserved hypothetical protein; 1 probable transmembrane helix predicted by modhmm.
       0.800
cstA
Carbon starvation protein A (cstA); 14 probable transmembrane helices predicted by modhmm.
 
    0.729
TGAM_0308
Sodium/alanine symporter; 13 probable transmembrane helices predicted by modhmm.
  
  
 0.710
acsA
Acetyl-coenzyme A synthetase (acsA).
  
  
 0.661
TGAM_1715
Na+/H+ antiporter, NhaC family; 13 probable transmembrane helices predicted by modhmm.
 
  
 0.634
TGAM_0093
ABC-type amino acid transport system, ATPase component.
  
  
 0.630
soxB
Sarcosine oxidase, subunit beta (SoxB).
  
  
 0.621
purR
Adenine phosphoribosyltransferase, fused to N-terminal DNA binding domain (purR).
   
  
 0.606
soxA
Sarcosine oxidase, subunit alpha (SoxA).
     
 0.601
TGAM_1855
Amino acid transporter; 12 probable transmembrane helices predicted by modhmm.
  
 
 0.595
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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