STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM_0992Transcription regulator, Lrp-AsnC family; 1 probable transmembrane helix predicted by modhmm. (174 aa)    
Predicted Functional Partners:
TGAM_0116
Transcription regulator, putative, AsnC/Lrp family.
   
 
 0.846
TGAM_0991
GTP-binding protein; Contains 1 GTP1/OBG domain and 1 TGS domain.
       0.838
trmB-3
Transcription regulator, TrmB-like protein (TrmB).
      
 0.783
pfpI
Peptidase C56, intracellular protease PfpI family (PfpI).
   
   0.664
citG
ATP:dephospho-CoA triphosphoribosyl transferase (citG).
       0.546
TGAM_1066
Transcription regulator, putative, containing PspC domain; 4 probable transmembrane helices predicted by modhmm.
       0.450
TGAM_0993
Transcription regulator, HTH/TrmB family.
       0.425
asnS-1
Asparaginyl-tRNA synthetase (asnS); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
 0.418
TGAM_0437
Transcription regulator, arsR family.
  
  
 0.408
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.