Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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ubiX3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiX); Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (178 aa)    
Predicted Functional Partners:
ubiD-2
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (UbiD).
 
 
 0.989
ubiD-1
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (UbiD).
 
 
 0.988
ubiA
4-hydroxybenzoate polyprenyltransferase, putative (UbiA); 8 probable transmembrane helices predicted by modhmm.
 
  
 0.952
TGAM_1110
Transcription regulator, Lrp-AsnC family.
       0.914
cyaB-2
Adenylyl cyclase, CyaB-type, putative (CyaB).
       0.914
fomA
Aspartate/glutamate/uridylate kinase, Fosfomycin resistance kinase FomA-like protein (fomA); Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids.
    
  0.904
dacZ
Conserved hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation.
       0.827
hps
3-hexulose-6-phosphate synthase-6-phospho 3-hexuloisomerase fused bifuntional enzyme (hps).
     
 0.520
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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